Genética Marinha

BIO149421 | CH 60 horas | PPGOCN

Professores responsáveis: Profa. Gisele Lôbo Hajdu (DGen/UERJ) e Prof. Thiago Silva de Paula (DGen /UERJ),

Horário: de 02/04/2024 – 21/05/2024, terças e quintas, 13:0–017:00 horas.

Local: Sala de seminários do DGen (sala 210), PHLC (Haroldinho), segundo andar, 

Semestre Letivo 2024/1

Programa

Estrutura da disciplina

Na semana anterior à aula, os alunos receberão um arquivo em PDF com o conteúdo do tema de aula.

No dia da aula, as dúvidas sobre o conteúdo serão esclarecidas e será feita a discussão do(s) artigo(s) correspondente(s).

Avaliação

A avaliação terá como base principal a apresentação de um projeto piloto de pesquisa com foco na aplicação de técnicas e métodos da área de Genética ao estudo do caso/organismo que o aluno atualmente desenvolve em seu projeto de pós-graduação, além da participação nos debates dos artigos.

Bibliografia

Silva EP, Duarte MR. 2019. Genética Marinha, 1ª Edição. Rio de Janeiro: Ed. Interciência, 218 pp.

Thompson F, Thompson C (Orgs.). 2020. Biotecnologia Marinha, 1ª Edição. Rio Grande: Ed. FURG, 855 p.: il.

Pereira RC, Soares–Gomes A (Orgs.). 2020. Ecologia Marinha, 1a. Edição. Rio de Janeiro: Ed. Interciência, 666 pp.

Solé-Cava AM, Russo CAM, Thorpe JP (Eds.). 2000. Marine Genetics (Developments in Hydrobiology, Volume 144). Kluwer Academic Publishers, Dordrecht, 232 pp.

Artigos para discussão

Aula 2

Gnecco, M., Nunes, F. L., González-Zapata, F. L., Dueñas, L. F., Zilberberg, C., Lindner, A., & Sánchez, J. A. (2023). Remarkable population structure in the tropical Atlantic lace corals Stylaster roseus (Pallas, 1766) and Stylaster blatteus (Boschma, 1961). Coral Reefs, 42(1), 181-194. https://doi.org/10.1007/s00338-022-02329-5

Aula 3

Stewart, E. C., Bribiesca‐Contreras, G., Taboada, S., Wiklund, H., Ravara, A., Pape, E., ... & Dahlgren, T. G. (2023). Biodiversity, biogeography, and connectivity of polychaetes in the world's largest marine minerals exploration frontier. Diversity and Distributions, 29(6), 727-747. https://doi.org/ 10.1111/ddi.13690

Huang, W., Chen, Y., Wu, Q., Feng, Y., Wang, Y., Lu, Z., ... & Yu, K. (2023). Reduced genetic diversity and restricted gene flow of broadcast-spawning coral Galaxea fascicularis in the South China Sea reveals potential degradation under environmental change. Marine Pollution Bulletin, 193, 115147. https://doi.org/10.1016/j.marpolbul.2023.115147 << Extra!

Aula 4

Peluso et al. (2023). Comparative population genetics of congeneric limpets across a biogeographic transition zone reveals common patterns of genetic structure and demographic history. Molecular Ecology, 32, 3812–3825. https://doi.org/10.1111/mec.16978 

Bronstein, O., Motro, U., Simon‐Blecher, N., Ndao, P. D., Savaya, A., & Achituv, Y. (2023). Molecular analysis separates the Atlantic population of Montagu's stellate barnacle into two cryptic species. Zoologica Scripta, 52(6), 654-661. http://doi.org/10.1111/zsc.12621 << Extra!

Aula 5 – Reprodução no mar, hibridização, e clonalidade

Choquet, M., Lizano, A. M., Le Moan, A., Ravinet, M., Dhanasiri, A. K., & Hoarau, G. (2023). Unmasking microsatellite deceptiveness and debunking hybridization with SNPs in four marine copepod species of Calanus. Molecular Ecology, 32(24), 6854-6873. http://doi.org/10.1111/mec.17183 

Lopes, F., Oliveira, L. R., Beux, Y., Kessler, A., Cárdenas-Alayza, S., Majluf, P., ... & Bonatto, S. L. (2023). Genomic evidence for homoploid hybrid speciation in a marine mammal apex predator. Science Advances, 9(18), eadf6601. https://doi.org/10.1126/sciadv.adf660 << Extra!

Pereyra, R. T., Rafajlović, M., De Wit, P., Pinder, M., Kinnby, A., Töpel, M., & Johannesson, K. (2023). Clones on the run: The genomics of a recently expanded partially clonal species. Molecular Ecology, 32(15), 4209-4223. http://doi.org/10.1111/mec.16996 << Extra!

Sekino, M., Hashimoto, K., Nakamichi, R., Yamamoto, M., Fujinami, Y., & Sasaki, T. (2023). Introgressive hybridization in the west Pacific pen shells (genus Atrina): Restricted interspecies gene flow within the genome. Molecular Ecology, 32(11), 2945-2963. http://doi.org/10.1111/mec.16908 << Extra!

Aula 6 – Diversificação/plasticidade e Especiação

Coulmance, F., Akkaynak, D., Le Poul, Y., Höppner, M. P., McMillan, W. O., & Puebla, O. (2023). Phenotypic and genomic dissection of colour pattern variation in a reef fish radiation. Molecular Ecology. https://doi.org/10.1111/mec.17047 

Aula 7 – Filogeografia

Temiz, B., Öztürk, E., Blanchoud, S., & Karahan, A. (2023). Phylogeographic and morphological analysis of Botrylloides niger Herdman, 1886 from the northeastern Mediterranean Sea. Diversity, 15(3), 367. https://doi.org/10.3390/d15030367 

Aula 8 – Biogeografia marinha

Figuerola‐Ferrando, L., Barreiro, A., Montero‐Serra, I., Pagès‐Escolà, M., Garrabou, J., Linares, C., & Ledoux, J. B. (2023). Global patterns and drivers of genetic diversity among marine habitat‐forming species. Global Ecology and Biogeography, 32(7), 1218-1229. http://doi.org/10.1111/geb.13685 

Aula 9 – Problemas de populações pequenas

Morris, J. T., Enochs, I. C., Studivan, M. S., Young, B. D., Mayfield, A., Soderberg, N., ... & Manzello, D. (2023). Ocean acidification influences the gene expression and physiology of two Caribbean bioeroding sponges. Front. Mar. Sci. 10:1223380. https://doi.org/10.3389/fmars.2023.1223380 

Aula 10 – Invasões biológicas marinhas

Duprey, J., Gallego, R., Klinger, T., & Kelly, R. P. (2023). Environmental DNA reveals patterns of biological invasion in an inland sea. Plos one, 18(12), e0281525. https://doi.org/10.1371/journal.pone.0281525 

Aula 11 – Genética pesqueira

Pirhadi et al. (2023). Genetic monitoring on the world’s first MSC eco-labeled common octopus (O. vulgaris) fishery in western Asturias, Spain. Sci Rep 13, 2730. https://doi.org/10.1038/s41598-023-29463-6 

Monteiro, J. R., Galvão, M. S. N., Perazza, C. A., de Morais, L. R., Hallerman, E. M., & Hilsdorf, A. W. S. (2023). Assessment of genetic resources of the mangrove oyster Crassostrea gasar along the south and southeast coast of Brazil: baseline for its conservation and sustainable use. Marine Biodiversity, 53(4), 57. https://doi.org/10.1007/s12526-023-01367-8 << Extra!

Aula 12 – Genética e poluição

Costa, G. M. D., Costa, S. S., Baraúna, R. A., Castilho, B. P., Pinheiro, I. C., Silva, A., ... & Graças, D. A. D. (2023). Effects of degradation on microbial communities of an Amazonian mangrove. Microorganisms, 11(6), 1389. https://doi.org/10.3390/microorganisms11061389 

Chan, Y. F., Chen, Y. H., Yu, S. P., Chen, H. J., Nozawa, Y., & Tang, S. L. (2024). Reciprocal transplant experiment reveals multiple factors influencing changes in coral microbial communities across climate zones. Science of The Total Environment, 907, 167929. https://doi.org/10.1016/j.scitotenv.2023.167929 << Extra!

Aula 13 – eDNA e ômicas

Foote, A.D., Alexander, A., Ballance, L.T., Constantine, R., Galletti Vernazzani Muñoz, B., Guinet, C., ... & Morin, P. A. (2023). “Type D” killer whale genomes reveal long-term small population size and low genetic diversity. Journal of Heredity, 114(2), 94-109. https://doi.org/10.1093/jhered/esac070 

Artigos de revisão

Palumbi, S. R. (1994). Genetic divergence, reproductive isolation, and marine speciation. Annual review of ecology and systematics, 25(1), 547-572. https://doi.org/10.1146/annurev.es.25.110194.002555 << Um clássico!!!

Narum SR, Buerkle CA, Davey JW, Miller MR, Hohenlohe PA. (2013). Genotyping-by-sequencing in ecological and conservation genomics. Molecular Ecology, 22(11): 2841–2847. https://doi.org/10.1111/mec.12350

Beaugrand G, Luczak C, Goberville E, Kirby RR (2018) Marine biodiversity and the chessboard of life. PLoS ONE 13(3): e0194006. https://doi.org/10.1371/journal.pone.0194006

Benestan, L., Fietz, K., Loiseau, N., Guerin, P. E., Trofimenko, E., Rühs, S., ... & Manel, S. (2021). Restricted dispersal in a sea of gene flow. Proceedings of the Royal Society B, 288(1951), 20210458. https://doi.org/10.1098/rspb.2021.0458

Selkoe, K. A., & Toonen, R. J. (2011). Marine connectivity: a new look at pelagic larval duration and genetic metrics of dispersal. Marine Ecology Progress Series, 436, 291-305. https://doi.org/10.3354/meps09238 

White, J. W., Carr, M. H., Caselle, J. E., Washburn, L., Woodson, C. B., Palumbi, S. R., ... & Blanchette, C. A. (2019). Connectivity, Dispersal, and Recruitment. Oceanography, 32(3): 50-59. https://doi.org/10.5670/oceanog.2019.310

Yeager, L. A., Estrada, J., Holt, K., Keyser, S. R., & Oke, T. A. (2020). Are Habitat Fragmentation Effects Stronger in Marine Systems? A Review and Meta-analysis. https://doi.org/10.1007/s40823-020-00053-w

Geller, J. B., Darling, J. A., & Carlton, J. T. (2010). Genetic perspectives on marine biological invasions. Annual Review of Marine Science, 2: 367-393. https://doi.org/10.1146/annurev.marine.010908.163745

Holland, B. S. (2000). Genetics of marine bioinvasions. Hydrobiologia, 420(1): 63-71. https://doi.org/10.1023/A:1003929519809

Bernatchez, L., Wellenreuther, M., Araneda, C., Ashton, D. T., Barth, J. M., Beacham, T. D., ... & Ovenden, J. R. (2017). Harnessing the power of genomics to secure the future of seafood. Trends in Ecology & Evolution, 32(9): 665-680. https://doi.org/10.1016/j.tree.2017.06.010

Rivera, H. E., Aichelman, H. E., Fifer, J. E., Kriefall, N. G., Wuitchik, D. M., Wuitchik, S. J., & Davies, S. W. (2021). A framework for understanding gene expression plasticity and its influence on stress tolerance. Molecular ecology, 30(6), 1381-1397. https://doi.org/10.1111/mec.15820